Cogent NGS Analysis Pipeline download

Version 2.0.1

Thank you for your interest in the Cogent™ NGS Analysis Pipeline!

Download the software

Click on the icon to download the CogentAP install package.

Linux, CentOS, Ubuntu, RedHat (64-bit versions)

Please refer to the installation directions in the User Manual or Quick Start Guide to install the software.

NOTE: A persistent internet connection is required during installation.

Supported operating systems

CogentAP can be installed on the following versions of Linux:

CentOS 6.9 & 6.10
RedHat 7.5
Ubuntu 17

Hardware requirements

For analyzing Illumina NextSeq® High Output data:

24-core CPU
64 GB+ RAM
500 GB+ available hard drive space

Analyzing MiniSeq™ or MiSeq® outputs may be possible on servers with less computational power than the specifications above. Analysis of HiSeq® or NovaSeq™ outputs would require better hardware than is listed.

Additional third-party software dependencies*

Conda (or Miniconda3)
bcl2fastq conversion software

*Not included with the software; must be downloaded and installed separately.

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