Bioinformatics resources
Our bioinformatics software tools provide powerful, simple, and easy-to-use solutions for unlocking the value in your NGS data. Find out which of our tools are compatibile with your Takara Bio reagent kit, organized by experimental type.
ICELL8 cx and ICELL8 application compatibility
| Software compatibility with ICELL cx and ICELL8 applications | ||||
|---|---|---|---|---|
| Cogent NGS Analysis Pipeline | Cogent NGS Discovery Software | ICELL8 scTCR Analyzer | ||
| Get started | Get started | Get started | ||
| ICELL8 cx single-cell system (640188, 640189) | ||||
| SMART-Seq Pro Appication Kit - 2 Chip (640257) |  |
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| SMART-Seq legacy kit for ICELL8 cx (640222, 640223, 640224) | |
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| ICELL8 cx 3′ DE application (640167 w/640199) | |
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| ICELL8 cx Human TCR a/b Profiling (640200 w/640179–640182) | (5′ DE) |
(5′ DE) |
(5′ TCR) |
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| ICELL8 MSND system (legacy version) | ||||
| SMART-Seq ICELL8 kits (640219, 640220, 640221) | |
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| ICELL8 3′ DE Kits (640164, 640165, 640166) | |
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| ICELL8® Human TCR a/b Profiling (640178 w/640179–640182) | (5′ DE) |
(5′ DE) |
(5′ TCR) |
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mRNA-seq kit compatibility
*These products are in the process of being discontinued. Please visit the product page for replacement products or contact us.
Total RNA-seq kit compatibility
| Software compatibility with Takara Bio Total RNA-seq kits | ||||
|---|---|---|---|---|
| Cogent NGS Analysis Pipeline | Cogent NGS Discovery Software | |||
| Get started | Get started | |||
| SMART-Seq Total RNA Pico Input with UMIs (ZapR Mammalian) (634354–634356) | |
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| SMART-Seq Total RNA Pico Input (ZapR Mammalian) (634357–634359) | |
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| SMART-Seq Total RNA Single Cell (ZapR Mammalian) (634360–634362) | |
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| SMART-Seq Stranded Kit (634442–634444)* | |
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| Stranded Total RNA-Seq (Pico Mammalian v3) (634485–634488)* | |
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| Stranded Total RNA-Seq (Pico Mammalian v2) (634411–634414)* | |
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*These products are in the process of being discontinued. Please visit the product page for replacement products or contact us.
Immune profiling kit compatibility
| Software compatibility with Takara Bio immune profiling kits | |||||
|---|---|---|---|---|---|
| Cogent NGS Analysis Pipeline | Cogent NGS Discovery Software | Cogent NGS Immune Profiler | Cogent NGS Immune Viewer | ICELL8 scTCR Analyzer | |
| Get started | Get started | Get started | Get started | Get started | |
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ICELL8 cx Single-Cell System (640188, 640189) |
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| ICELL8 cx Human TCR a/b Profiling (640200 w/640179–640182)* | (5′ DE) |
(5′ DE) |
(5′ TCR) |
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| ICELL8 MSND system (640000, modular version) | |||||
| ICELL8 Human TCR a/b Profiling (640178 w/640179–640182)* | (5′ DE) |
(5′ DE) |
(5′ TCR) |
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| Immune profiling kits | |||||
| SMART-Seq Human BCR (with UMIs) (634776, 634777, 634778) | |
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| SMART-Seq Human TCR (with UMIs) (634779, 634780, 634781) | |
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| SMART-Seq Mouse TCR (with UMIs) (634814, 634815, 634816) | |
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| SMART-Seq Mouse BCR (with UMIs) (634351, 634352, 634353) | |
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| SMARTer Human BCR IgG IgM H/K/L Profiling Kit (634466, 634467)* | |
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| SMARTer Human TCR a/b Profiling Kit v2 (634478, 634479)* | |
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| SMARTer Human TCR a/b Profiling Kit (635016)* | |
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| SMARTer Mouse TCR a/b Profiling Kit (634402, 634403 & 634404)* | |
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*This product is in the process of being or is discontinued. Please visit the product page for replacement products or contact us.
Reproductive health kit compatibility
| Software compatibility with Takara Bio reproductive health kits | ||
|---|---|---|
| Embgenix Analysis Software (RUO) | Embgenix Analysis Software for ESM Screen Kit | |
| Get started | Get started | |
| Embgenix PGT-A Kit (RUO) (634760) | |
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| Embgenix ESM Screen Kit (634782) | |
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RNA-seq
Cogent NGS Analysis Pipeline
Analyze RNA-seq data generated by select Takara Bio applications.
Cogent NGS Discovery Software
Visualize RNA-seq data in UMAP or t-SNE charts from the output of the Cogent NGS Analysis Pipeline.
SMART-Seq DE3 Demultiplexer
Demultiplex sequencing data from SMART-Seq mRNA 3′ DE into sorted read data files.
Immune Profiling
Cogent NGS Immune Profiler Software
Analyze sequencing data from libraries prepared using our BCR or TCR profiling kits.
Cogent NGS Immune Viewer
Quickly visualize and generate publication-ready figures from the output of the Cogent NGS Immune Profiler.
ICELL8 scTCR Analyzer
Analyze single-cell TCR data generated from automated ICELL8 system workflows and FASTQ files generated by the Illumina® MiSeq® instrument.
SMARTer Human scTCR Demultiplexer
Demultiplex single-cell TCR sequenced data generated from the plate-based SMARTer Human scTCR a/b Profiling Kit.
Reproductive Health
Embgenix Analysis Software
Analyze sequencing data results from the Embgenix PGT-A or ESM Screen Kits on cloud-based software.
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